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how to get "lsmeans "?
Off topic:Spam on R help increase?
kate editor for R
Install RMySQL with R 2 4 0
Barplot
Rserve and R to R communication
Re: R package development in windows BayesianFilter detected
Statitics Textbook any recommendation?
to draw a smooth arc
regular expression
Hardware for a new Workstation for best performance using R
Bad optimization solution
Suggestions for statistical computing course
Evaluation of defaults in functions
help comparing two median with R
zero random effect sizes with binomial lmer
lattice and several groups
subsetting, aggregating and zoo
Matrix multiplication using apply() or lappy() ?
R package development in windows
Lining up x y datasets based on values of x
Debugging R 's code: boxplot stats
A function for raising a matrix to a power?
subset
Replacement in an expression can 't use parse()
[R] Timings of function execution in R [was Re: R in Industry]
acos(0 5) == pi/3 FALSE
Help with interfacing C & R
R and clinical studies
read fwf and header
setting new working directories
random uniform sample of points on an ellipsoid (e g WG
Weighted least squares
Loop with string variable AND customizable "summary " output
rename cols
Regarding Vista
Multiple Conditional Tranformations
multinomial logistic regression with equality constraints?
A coding question involving variable assignments in ifelse()
help went away from top emacs window : (
Large matrix into a vector
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additional graphical parameters in contour function

Hello Do you know why additional graphical parameters (like "type " "pch " ...) do not work in the R contour fonction. For example the command 'contour(... type "o " pch 16) ' gives nothing just simpl

optim

Dear R-helpers The function optim implements algorithms that I would like to use. I have function implemented in R which given the parameters of which minimization is to take place returns a sca

fit non linear model using weighted least squares

Dear all I am new in using R. I 'd like to fit a non linear model using weighted least squares. I am using the gnls function but I don 't know how to perform a weighted least squares (my weights

nbrailo@ccac-art.edu

I will be on vacation until August 11 2005. I will respond to your message when I return. Thank you. If you need immediate assistance please call or e-mail the following for circulation relat

how to read individual values from a pixmap object

Hi All I have a greyscale image that I am reading in through RGDAL and placing in a pixmap object. As an example use the logo.jpg file that comes with the RGDAL package #Read the file logo <-

Puzzled at rpart prediction

I 'm in a situation where I say > predict(m.rpart newdata D[N1+t ]) 0 1 173 0.8 0.2 which I interpret as meaning an 80% chance of "0 " and a 20% chance of "1 ". Okay. This is consistent with

Odd timing behaviour in reading a file

Hi all please don 't ask me why I tried this but....... I have observed some odd behaviour in the time taken to read a file. I tried searching the archives without much success but that could be m

one more minor and small bug in lattice in R

Dear all. I have found one more minor bug in the Lattice package. When xyplot plots several curves on each panel with the default panel function panel.xyplot and when it is called with "g " %in%

color palette

Hi I have a matrix with both positive and negative numbers I would like to use image() to draw a heatmap. How can I can design a palette (or is there a function already available) that treat negativ

multivariate F distribution

Dear List Is there any function in R to generate multivariate F distribution with given correlation/covariance matrix? Actually I just want to generate some 2-dimentional non-normal data sets (ske

A question on validity checking for S4 classes

Folks (This is a question on the formal S4 class system). R 2.1.1 on Windows. I 'm pretty sure the following is a failure of my understanding rather than a bug so may I ask for some clarification?

problem with for()

Dear list can someone tell me why this two pieces of code give me the same results? > for(i in 0 5){ sum[i] i } > sum [1] 1 2 3 4 5 > for(i in 1 5){ sum[i] i } > sum [1] 1 2 3 4 5 should

using weighted.mean with tapply()

I am trying to calculate the weighted mean for a of 10 deciles and I get an error > decile <- tapply(X mat$trt1m INDEX mat$Rank FUN weighted.mean w mat$mcap) Error in FUN(X[[1]] ...) 'x ' and 'w

Convert numeric to factor

Hi I tried to do a logistic regression with polr(MASS). I thought I already converted the response to factor but obvious I was wrong. Could anyone tell me what I did wrong and how to correct it? Th

Job: Computational Biology at FHCRC is hiring

Greetings all Our group[1] is seeking to hire three programmers to work on various aspects of Bioconductor as well as other projects within the Computational Biology group at the Fred Hutchinson Can

outlier detection

Hi there I am wondering what packages are available in R which can do "outlier detection " in large-scale dataset. Thanks for sharing info weiwei -- Weiwei Shi Ph.D "Did you always know? " "No

Eclipse, R, plug-in?

Has any developed or is anyone developing a plug-in[1] for using R with Eclipse[2]? Eclipse is an Integrated Development Environment (IDE) written in Java. While originally used as an IDE for J

help regarding loops in R

I have a large vector of around 12597 elements and I wish to calculate p-value for each element using a formula of something like p-value 1- exp^(kexp^(-labda)) I was wonder

R CMD build error

Dear list I try to update the prabclus package. R CMD check works nicely no warnings good results in all tests. However building the package fails ginkgo /disk5/home/chrish/RAusw/libsrc R CMD b

help for cell2nb and queencell in spdep package

Dear Dr. Bivand and R-users I have a 5 by 5 grid say location[1 5 1 5] and I want to know the indices of 8 neighbours of each cell. For example for location[2 2] its neighbour coordinates are

passing variable to formula environment

List gurus I 'm trying to code a Gompertz growth curve function as part of a larger project and have run across a problem due to my ignorance of environments. Some sample data and the function are

R-squared

Good evening I am Marta Colombo student of the "Politecnico " in Milan and I 'm looking for some help.I 'd like to know how I can see R-Squared using loess because in the output there are only number

File size limit exceeded

R quits with the message above? What is the cause of the message and how can I avoid this? I am using R.2.1.0 on a debian box.

clara - memory limit

Dear all I 'm trying to estimate clusters from a very large dataset using clara but the program stops with a memory error. The (very simple) code and the error mydata <-read.dbf(file "fnorsel_4px.db

red-black-green color palette?

I 'm working on some heatmaps and the person I 'm working with would prefer a red-black-green color palette (red denoting gene induction and green denoting gene repression). Does such a palette exis

make error: X11/Intrinsic.h: No such,,,

Hi all I 'm trying to build R 2.1.1 on Ubuntu 5.04 i686-SMP. Configure goes well with ./configure --with-BLAS --with-readline no but once I run 'make ' I get the following error In file include

lda function

Hello I 'm tring to make a linear discriminant analysis eith lda (MASS). In the value of the resulting object is there information about the value of the centroids of the discriminated group for the

abline and linearity over groups

Dear R users please can you help me understand the behaviour of abline using function lm. I 'm trying to learn linearity over groups. So I make three groups with 10 values each test data.frame(cb

Seeking help with a loop

Hello R Helpers After spending considerable time attempting to write a loop (and searching the help archives) I have decided to post my problem. In a dataframe I have columns labeled q33a q33b

glmmPQL error in logLik.reStruct

Dear R users I 'm attempting to fit a GLM with random effects using the tweedie family for the error structure. I 'm getting the error iteration 1 Error in logLik.reStruct(object conLin)
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