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diagnostic functions to assess fitted ols() model: Confidence is too narrow?

Dear all When fitting an "ols.model " the confidence interval at 95% doesn 't cover the plotted data points because it is very narrow. Does this mean that the model is 'overfitted ' or is there a spe

selecting matrix cels by two factors

Hi I have a (numeric) matrix X of the type > X <- matrix(c(1 9) ncol 3 nrow 3) > colnames(X) <- c( "A " "B " "C ") > rownames(X) <- c( "D " "E " "F ") Also a have a data frame Y like > Y <- as.data.

basis and penalty matrices for natural cubic splines

Hi I am trying to get the basis matrix and penalty matrix for natural cubic splines. I found R function "ns " can generate the B-spline basis matrix for a natural cubic spline and "bsplinepen " can

partially linear models

Hey I am estiamting a partially linear model y X\beta+f(\theta) where the f(\theta) is estiamted using wavelets. Has anyone heard of methods to test if the betas are significant or to ad

R compile on AIX 5.3

I 'm trying to compile R on AIX 5.3. I 've gotten "configure " to work but "make " generates the following errors Target "R " is up to date. Target "R " is up to date. Target "R " is up to date. Target "

Wilcoxon Mann-Whitney Rank Sum Test

Does anybody know what is relation between 'T ' value calculated by 'wilcox_test ' function (coin package) and more common 'W ' value? Jarek Tuszynski >library(coin) > ### Tritiated Water Diffusion Ac

dendrogram branches with different lty

Dear r-list I am trying to visually seperate the two main clusters of a dendrogram. The idea is to use 'edgePar list(lty 3) ' for 'dend1[[1]] ' and 'edgePar list(lty 1) ' for 'dend1[[2]] ' I have no

Butterworth low-pass filter

Has anybody implemented code to extract coefficients for a Butterworth low-pass filter? I know Matlab has it implemented in the signal toolbox. I want to make use of a 10 point Butterworth low-pass fi

tapply question

HI Suppose I have the following data structure. LRT tp 1 1.50654010 522 2 0.51793929 522 3 0.90340299 522 4 1.20293325 522 5 1.05578774 523 6 0.01617942 523 7 0.68183543 523

Need help for a statistical problem ( "See the posting guide ")

In response to a thread where a statistical question unrelated to R was asked Uwe Ligges wrote > PLEASE do read the posting guide! > http //www.R-project.org/posting-guide.html > > Please ask a l

column name of a table

hy all I wish to switch in a part in my code that use "read.table " to "scan " actually i use this tab <-scan( "data.dat " what integer() skip 1) dim(tab) <-c(75 length(tab)/75) tab <-t(tab) It gives m

multiple plots per page

R-help I would like to place nine (3X3) plots per page. I am not properly implement mfrow(3 3) in the script below jpeg( "xyplot.jpg ") #names output file my_args <- commandArgs() #sets up to take

notification (PR#8400)

I don 't care what you guys say -- that email was for me!! That money is MINE baby!!!!!!

DUPLEX

Hi all not to invent the wheel a second time I wonder if someone out there has programmend Snee 's CADEX algorithm (Validation of regression models Methods and examples Technometrics 19 415-428).

Vector of matrix

Dear statisticians I would like to save results for a "for loop " in a vector previously created. My result would be of class "matrix ". I tried the following script Script #Creation of a previous

autocorrelation test

Hi all I would like to test the relevance of a vector field (i.e. if the vectors are organized or not). To do so I would like to use an autocorrelation test so that I have two questions - is th

Help with data.frame and lapply

-----BEGIN PGP SIGNED MESSAGE----- Hash SHA1 Hello I 'm having problems with this line of code X.lm <- lapply(names(d) function(x) lm(d[ "cls "] ~ d[x] data d)) d[x] is what is giving trouble h

bivariate kernel density estimates at point locations (rather than at gr

On Thu 15 Dec 2005 14 21 17 -0500 Strickland Matthew wrote SM > Hi SM > SM > My data consists of a set of point locations (x y). SM > SM > I would like to know if there is a procedure for bivariate k

lme4: Extract fixed effects Val, SE, t, p

Hi All Using glmmPQL you can extract the full table of estimates SE p-values etc using as an example mymodel <-glmmPQL(mymodel here) summary(mymodel)[[18]] How can I pull this table out of a l

question on write.table

Hi I have a question on write.table I have a data.frame called t7 as below > dim(t7) [1] 14015184 6 > t7[1 5 ] uci uce par line graphical.forms stems 1 0 0 0 0 active

bivariate kernel density estimates at point locations ( r ather than at

You can try `locfit ' though it does local likelihood rather than garden-variety kernel density estimation. Here 's an example library(locfit) data(cldem) den.fit <- locfit(~ x1 + x2 data cltrain

bivariate kernel density estimates at point locations (rather than at grid l

Hi My data consists of a set of point locations (x y). I would like to know if there is a procedure for bivariate kernel density estimation in R that returns the density estimates at the observed

ncp > 37.62 in pt

Hi ?qt says ncp non-centrality parameter delta currently for 'pt() ' and 'dt() ' only for 'ncp < 37.62 '. 'pt ' doesn 't complain when I give ncp > 37.62 (pnt.c seems to have a work

millions of comparisons, speed wanted

Dear all I have a 10 columns matrix which has 2^10 1024 unique rows with values 0 and 1. What I would like to do is a little complicated in a simple statement for a subset (say 1000 rows) I wa

Problems with snow and rpvm

Dear Friends I 'm trying to learn to use parallel computation using snow & rpvm Now I have two boxes 1) Pentium 4 pvm 3.4.5 R 2.2.0 with FreeBSD 5.4 (box uffbsd) 2) PowerPC pvm 3.4.5 R 2.1

Name conflict between Epi and ROC packages

The name conflicts in Epi and ROC packages (2 'ROC ' functions are the problem) cause the following code to work once but not twice library(MASS) data(cats) x cats[ 2] y ifelse(cats[ 1]

How to simulate correlated data

Hello there I would like to simulate X --Normal (20 5) Y-- Normal (40 10) and the correlation between X and Y is 0.6. How do I do it in R? Thank you very much Lisa Wang

One sample test

Hi all I would like to test the uniformity (or no uniformity) of a vector field. To do so I would like to use a ks.test (Kolmogorov-Smirnov) but don 't know what value to give for the second parame

MNP - discrete choice experiment

Hello I need a little initial help with the MNP package. I am trying to analyze a discrete choice experiment with the following settings - choice sets consist of 3 alternatives - choice alternati

bug?

> library(foreign) > da <-read.dta(file.choose()) > da startdat starttim enddate endtime days hoursmin secused 1 2005-01-11 2 2005-12-15 20.19 NA NA 9 > attributes(da) $d
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